Product Updates - Progeny 7 Release Notes

PROGENY 7.6.04 UPDATE
Fixes

Batch XML imports were causing a failure in certain cases
Some users were experiencing a timeout issue with the login screen news feed
In a specific case, a sample would be removed from the workflow after the completion of the previous stage
The deletion of a sample level field was not correctly removing the field from the aliquot inherited fields
The Assign to Individual system reaction was prompting incorrectly when using a user-defined field

PROGENY 7.6.03 UPDATE
Fixes

Table summary fields were not displaying correctly on pedigree subtext
Users could not delete shortcuts from the pedigree lists
Tab order was not displaying correctly in data sheet properties
Certain characters were causing errors in the XML parser
Change Row option in reporting was not applying the change to the correct row
Spreadsheet filters were not hiding table rows for filtered individuals
Date fields could not be entered as blank in scan window reactions
Certain cases of adding a marker to a set were not working correctly
Resizing of the pedigree thumbnail to a small size was causing a crash
Table summary fields would not print correctly in a print reaction
Network connection settings were not updating correctly when the service name was changed

PROGENY 7.6.02 UPDATE
Fixes

Action security is getting reset to all users when you update any part of an action
Action Security for deletion was not working in some cases
Default action prompt is presented if previous default action has been deleted
Query on barcodes was not working properly for non-numeric barcodes
Certain cases of batch next stages only move the first sample to the next stage
Some table fields would not delete if previously did not delete successfully
Spreadsheets were not properly retrieving values of data over 100 characters when editing

PROGENY 7.6.01 UPDATE
New Features

New system reaction for Remove from Workflow (and Workflow Stage)
The customize options copy features selection now copies the proband arrow position
The pedigree marker legend now does not display if the generation does not have marker data

Fixes

Numerous security enhancements were made to correctly enable/disable menu items
Automated backups now select the newly created event and prevent events with spaces in the name
Chain of Custody tab now highlights the entire row of data when selected
Auto increment for adding aliquots was failing once the count reached double digits
Certain haplotypes were not coloring correctly
Sample imports that included a volume column were rounding volumes less than 1 down to 0
Pedigree imports would not allow the import of a space into a number fields
Pedigree imports that also added samples were not creating barcodes for the new samples
The deletion of workflow stages was not properly resetting the workflow sequence
The renaming of plates displayed within Freezers was incorrect
Chain of Custody Audit queries were not handling the end dates properly
Action security was not preventing the deletion of actions for certain classes
Certain print reactions were not using the proper font size
Default actions were not loading properly if the action no longer exists

PROGENY 7.5.08 UPDATE
New Features

Progeny 7 can now convert version 5 databases to the current version
Additions were made to the report setup dialog

Fixes

A fix was made for refreshing data folders when fields are imported
The deletion of folders on the Individuals navigation was not refreshing properly
Some samples were not populating properly on the Individuals navigation
Sample level computed fields were allowing saves with no definition
Action barcodes were not resetting properly when the action was deleted
A database version was needed to correct an issue with saving inherit fields in add aliquot reactions
Reaction prompts now require Y or N for checkbox fields and now display correctly upon completion
Print reactions now allow users to specify the number of copies
Workflows containing add aliquot reactions were not advancing the stage
In certain cases, haplotype colors were not displaying correctly
Certain cases prevented the change of the value when using a lookup table in pedigree symbols
Marker reports now allow for the Chromosome Name system field
Save as XML from the main screen was not allowing exports
Load from XML was not loading marker data properly in some cases

PROGENY 7.5.05 UPDATE
New Features

Individuals now displays the samples in the bottom pane for the selected person
The Add Container window now displays the full path for the selected container
Individual imports no longer require a gender column
The replace function in spreadsheets now allows blanks

Fixes

A fix was made to automated backups to prevent event creation problems
Computed fields were not displaying properly in the pedigree subtext
The assign to individual reaction was not allowing the choice of certain fields
Print reactions were not working correctly
Container maintenance was not allowing for updates to container types
Users could drag and drop plates to any container location
Genotype imports were reporting phase changes as discrepancies
Import format folders could not be deleted
Imported fields from FAM or XML files were not populating correctly in Fields
Individual imports were not handling commas within data when updating existing individuals
The main screen query option was not displaying the folder path correctly
Context searches were failing to produce results from computed fields that contain another computed field
Summary and table summary fields were not copying correctly within mobile operations
Pedigree subtext that was to display above the icon was always displaying on the same row
Certain cases of Snap to Grid within large pedigrees were causing crashes
Reporting was reordering the fields when a field was changed from one to another
Global searches that resulted in fields were not opening the field when clicked
Marker spreadsheet formats were not saving correctly
"Number fields were adding additional decimal places when displayed in spreadsheets, data sheets and pedigrees"

PROGENY 7.5.02 UPDATE
New Features

Two new reaction types were added (Create Sample and Create Aliquot)
An option for Find Container was added to the Freezers navigation
Data entry rules were added to the scan window (Double data entry and Required entry)
In Samples and Freezers, the aliquots tab is now a smartlist
Clinical users can not access see the samples per person within a pedigree
Clinical users can now turn on the Show Linkage Selections property within the pedigree

Fixes

Multiple fixes were made to reporting
Report formats were not loading properly
Custom genotype imports were not importing correctly if there was no data for either allele
Certain Mendelian error checks were causing database errors
Custom genotype imports were not importing correctly if the marker was an STR
XML exports were not including information for show fieldtype, show header, show border per field
XML exports were not exporting table summary fields correctly
XML exports were not copying certain computed fields properly
Analysis exports that had queries within selected markers/individuals were not working
Data sheet formats were not saving/loading fields correctly for all tabs
Summary field paths were not working properly for system fields
The description box for adding containers was only allowing a single line of text
A fix was made to prevent the creation of two container types with the same name
A fix was made to the Add Container window to prevent setting the parent container to a container that does not exist
Global searches were cancelling results when using multiple search categories
Global search was not populating the correct individual names
A fix was made to the import to not allow gender to change for individuals within a pedigree
A change was made to prevent users from adding individual shortcuts to a pedigree
Computed table subfields were not populating correctly in the pedigree subtext
The New Sample window now saves the last setting of the Open on Save option
Certain table subfield queries were not working for in and null operators in the spreadsheet
Marker spreadsheet queries were not working if querying over the Marker Type system field
Spreadsheet single row table export was not working properly if you only had tables in the spreadsheet

PROGENY 7.5.00 UPDATE
New Features

Users can now set validations on fields for unique values, ranges, masks and number of characters
Users can add data entry rules to require entry and to confirm entry
The add new field window was redesigned to display validations and security
A new reporting section was added to create aggregate reports of data
Validations are included in all import operations, including Mobile, XML and the Import Module
Users can now set security for Containers
Users can now specify security for Actions to determine which users can perform the Action
Barcode printing is now available for Containers and Actions
The position system field will now auto-increment to the next available position in a container
Pedigree name is now available in display fields
Multiple samples can be pushed to the next workflow stage throughout the software
Users can now scan a container in the scan window to start the first action
Each user now has the ability to choose their own default Action
Enhancements were made to table fields to increase speeds for queries and table summary retrievals
An export option was added to spreadsheets to export table rows into one row per individual/sample
An enhancement was made to the import to error on a single row when the data type does not match

Fixes

A fix was made in genotype imports to prevent AB - BA discrepancies
A change in the saving of fields to prevent incorrect inserts when a lock prevented the field creation
Spreadsheets were not allowing a right-click to open a pedigree or data sheet when only one row displayed
Barcode printing display fields were not displaying properly
The Workflow Stage system field was not displaying properly
Position was allowing incorrect values to be entered
Users now cannot delete actions if they are utilized within a workflow stage
Position was requiring capital letters
Workflows were setting the sample to the next stage even if it did not complete successfully
Checkboxes were not being converted properly from Progeny 6
The entry of NoCall was not working in the spreadsheet and data sheet
Batch print actions were only printing the first label
Users could not import samples using only the Sample Name column
Haploview and PLINK export reruns were not displaying Affection Status and Unique ID correctly
Mobile copies were not successful if the user included markers
Mobile copies were not copying the data sheet tab order correctly
Genotypes were not copying when copying a pedigree
Hyperlink fields where only allowing 100 characters in the default value
Spreadsheet filters were returning all results if you chose OR and did not give a second filter
The IN operator in spreadsheets was not working on table subfields
Container viewer now displays the correct icon
Set initial aliquot volume system reaction was not allowing the use of the remainder of the sample
The deletion of user classes was not getting handled properly
Checkbox fields were not allowing Y or N in a reaction
Adding a sample to a plate in the plate viewer was using the first column instead of the Sample Name
Symbols using computed table subfields were not displaying properly

PROGENY 7.1.03 UPDATE
New Features

Users can now set the number of days until user’s password expires
Users can now lock out users that have not logged into the database within a specified number of days

Fixes

Certain display fields for barcode printing were not saving and printing properly
Batch aliquot creation was adding all aliquots to the first sample
Users could not save changes to alias names for markers
Plate viewer queries were not displaying if a individual level computed field was in the smart list
Marker import updates were stopping if a non-numeric character was in either the bp or cM columns.
Using the Sample Count system field in symbols would not display properly

PROGENY 7.1.02 UPDATE
New Features

Users can now view and filter all Chain of Custody records
New Container Types - Building, Room, Custom 2, 3, 4, 5
Print reactions can now include individual level fields
The Scan window now has a calendar option for date fields
The Scan window was expanded to allow for more room for error messages and display fields
Custom marker imports now allow users to specify a delimiter when importing Allele AB values

Fixes

Haplotypes were not saving in the pedigree if large amounts of markers were displayed
The IN query operator was not working in select cases
Haploview exports were generating an Info file error in some cases
Family Based Association exports were exporting properly when using a non-system field as the Unique ID
Sample Name was not accessible as a system field in the pedigree

PROGENY 7.1.01 UPDATE
Fixes

Workflows now have circular arrows when stages have themselves as next stages
Databases were not allowing access to users other than ‘progeny’ while using a mobile device
Databases with negative genotype error counts are now corrected

PROGENY 7.0.00 - 7.1.00 UPDATE
New Features

Workflows Navigation Bar was added
Workflows now allow the user to name the stage, choose the action and set the protocol
Workflows stages display the samples currently in that stage and allow for batch processing
Add Aliquot reaction now allows for multiple aliquots to be drawn from a sample in the same action
Users can now copy plates
LIMS users can now customize the Container Structure through Container Maintenance
Actions can now be run from the Sample Data Sheet
The Chain of Custody tab was reordered and now displays if the action was a part of a workflow
A new system reaction for Assigning a Sample to an Individual was added
Add Aliquot reaction now allows for the user to specify fields to inherit data from the parent sample
Actions can now be run from the Sample Spreadsheet
Users can now set the font size and scale for Barcode Label printing
Actions can now be set to only run once per sample
The Custom Genotype export now has the ability to export relationship information in linkage form
Genotype imports now allow you to specify Custom Allele Values for AA, AB, BB
The Custom Genotype export now has an option to export additional phenotype fields
Analysis exports now allow you to choose sub-pedigrees for data export
HelixTree exports can now create a project, add to existing project or just create the files
Data Sheets now populate on demand, large data sheets should see substantial speed improvements
All Queries now have the ability to search over a comma separated list using the IN or NOT IN function
The Add Sample window in the pedigree and individual navigations now lock to the selected individual
Fill options within the Spreadsheet were added to the right click menu
Show fieldtype, header and border are now defaulted on in the data sheet
Added a full help menu to all Navigation bars
The pedigree can now separate the Subtext Legend and the Marker Legend
Individuals within the pedigree now have a default Individual Name of Pedigree_UPN

FIXES

Autosize Subtext was not accounting for the Haplotype bars in the pedigree
Computed fields were not displaying correctly in the Scan window
A fix was made to the Active Connections option to view connetions to the current database only
The menu for setting inferred status in the pedigree was displaying incorrectly
The Haploview export was not handling table fields correctly
Plate Exports were not handling barcode and container name system fields
A fix was made to the Login screen to handle large database paths
Actions with a print reaction were not able to be default actions
Users were not able to change the name of a plate
A fix was made to the Mendelian Error checking in the Genotype Imports
Context searching was not handling pedigree name in Samples
An update was made to the counting of sample during an import
A fix was made to allow for data to be updated on tables with auditing turned on
The pedigree was not setting the page count correctly
Running Fit to Page in the pedigree was causing an incorrect display
Remove an Individual from a Pedigree was leaving relationship information
If a user Removed an Individual from a pedigree, you must save the change before it is created
Spreadsheets were not querying correct on table subfields
There was a problem with populating data sheets for Shortcuts
A change was made to populate the correct name for individuals in the Add Sample window
Lookup Tables were not correctly handing hyperlink fields
Data Sheets were not correctly saving the default settings
Table Summary fields were not saving correctly
Replace All in the Spreadsheet was causing a crash if the find value was empty
A change was made to Clear Genotypes to handle additional cases
Spreadsheet imports into tables was not aligning correctly
Merlin, FBAT, and PLINK exports were not handling marker break overlaps correctly
Summary and Table Summary fields were not displaying correctly in Field Maintenance
Marker imports were forcing Allele Values to lowercase in one column per call imports
The Fields window in the Spreadsheet was renumbering incorrectly when you drag a column to change the order
Marker imports were not handling delimiters with more than one character
Custom Genotype exports were not saving the query within selected individuals criteria
Haplotype values were not editable once the Icons slider was opened
Copying fields and added text between data sheets was not handling returns in the data
The login screen was not allowing a connection after an attempted connection failed
Data Sheets were allowing Select All in data entry mode
BRCA exports were not exporting correctly
Box viewer was not drawing the wells correctly
Imports were counting the header row in the total number of individuals imported
The Freezer navigation was not populating based upon Sample security
Integrated Login was not working correctly and is now preventing login to local databases
A new genotype rejected error was put in for samples that are not tied to individuals
PLINK export was assigning a gender to unknown gender individuals
Clear Genotypes was not displaying the Individual Name properly
The program was closing if the user opened 8 or more data sheets
Remove from Container system reaction is now clearing the Position data
Copy Individual was not copying the Individual Name
Icon Subtext set to display above the icon was not displaying properly
Symbol set to use Gender were not displaying correctly
Data Sheet image fields were not displaying in high resolution
Plate printing was improved to fit on a page, display the wells, and split pages correctly on large plates
The counts of very large Genotype imports were displaying negative numbers
Data Sheet added text was not importing properly on XML imports