Supported Methods

Quality Checks

• Mendelian pedigree check
• Hardy-Weinberg equilibrium test
• Call rates
• Minor allele frequencies
• Allele frequency estimations

Association (Case-Control)

• PLINK
• Haploview
• Phase v2

Family Based Association

• Haploview
• FBAT
• PBAT
• QTDT

Linkage

• Genehunter
• MLINK
• Allegro
• Merlin
• Mega2
  1. Simwalk2
  2. SLINK
  3. SAGE
  4. SOLAR
  5. Linkage
  6. Allegro
  7. Merlin
  8. Mendel