Discrepency checks

  (2 posts)
  1. User has not uploaded an avatar
    Lizr
    Member
    Posted Dec 11, 2008 #

    I find the discrepency checks very useful for checking our data generated on the genome wide platform with our taqman genertaed data for validating SNP's. It is very useful to see if we have a platform issue when validating these SNP's. However Currently the database registers AB and BA as discrepent - which they aren't. This is really frustrating when you have to go through 1000's of these. I really only want to know if an genotype goes from for example AB to BB or AA, or if there is typing but the second assay is null. Currently we are working on 7.5.0.

    Can you let me know if the latest version does correct this problem?

  2. Lianne Mink
    Lianne Mink
    Progeny Staff
    Posted Dec 11, 2008 #

    Lizr,

    We are aware of this issue with discrepancies. This will be remedied in the 7.5.05 release which is due out early next week. Thank you for your post!


 

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