http://www.progenygenetics.com/community/ Progeny Community » Tag: Invalid SNP - Recent Topics en Thu, 09 Feb 2012 09:13:19 +0000 http://www.progenygenetics.com/community/topic/74#post-159 Tue, 20 Jul 2010 11:57:40 +0000 ldowns 159@http://www.progenygenetics.com/community/ <p>I have a marker set of over 180 000 SNPs, but am struggling to get hold of the standard alleles for the set. </p> <p>I am under the impression (from the user manual) that the standard alleles are optional, and therefore not required, but when I try to import the genotyping data it all gets rejected with the message "Invalid SNP (no allele match for ACTG)".<br /> I am certain it has to do with the standard alleles, because I have worked them out from the genotyping data for a couple of markers, and when the markers have standard alleles defined, the genotype imports work perfectly.</p> <p>Please can someone help me with this?</p> <p>Thank you </p>