Bug Fixes

• Changes to datasheet tables do not get saved to the database in Google Chrome

Bug Fixes

• Smart draw still causes pedigrees to allocate too much vertical space even when subtext lines do not support it
• Actions/workflows with reactions linked to Yes/No fields do not allow workflow or action to get past a reaction with that field
• When you run smart draw on a pedigree it ignores dimensions and makes generation gap taller than it should be
• Invalid menu options display if user begins typing text in a hyperlink field before menu to the right appears
• Right click menu to open sample datasheet in plate/container viewer does nothing
• The system does not display one of the individuals in the individual listing page when a new individual is added to the smart list
• Users are able to delete or save spreadsheet formats even though security permissions do not allow
• Clicking hyperlink to open pedigree in Firefox causes a JavaScript error to be displayed sometimes
• Father ID does not display in the pedigree members smart list
• Gender now displays as M/F/U for Male, Female or Unknown respectively, in smart lists, spreadsheets and spreadsheet exports
• Subtext added to individual on the lowest level the text is cut off by the window
• In web data capture module pedigree viewer, ensure male on left; currently grandparents have female on left
• In web data capture module, update deceased status on the pedigree viewer immediately after the change is made in the datasheet

Enhancements/Features

• Allow copying, scrolling and other non-edit functions in otherwise non-editable fields such as system fields, calculated fields and locked datasheet fields in read only mode
• Use mouse over on hyperlink fields to popup a menu to open/view or download the document if field has value
• Replaced document upload menu with a button that is part of the hyperlink/document field editor
• Add validations to document management so that :-
  1. Existing files can be renamed by changing name of document in datasheet or spreadsheet
  2. If name entered in datasheet refers to a non-existing document system must reject it
  3. Value can be changed from document name to absolute URL, email link or to an empty value
• Redesign login screen to remove login links from signup page
• Add prompts to login/sign up page for web data capture module
• Create administration screen to delete unwanted users from the web data capture module
• Add configuration screen to enable family interview screen to be first page user sees when they sign up for family history study
• Added ability to draw hooks on line intersections in web pedigrees
• In web data capture module, make deceased status system field editable and update marker on pedigree in real-time
• Web data capture module, users can now add cousins and half-siblings through a new popup on the family table page

Enhancements

• SYNC – Add Progeny Sync functionality
• MAIN – enable the status bars to give a count of total items in a list and selected items in a list
• MAIN – ability to batch select fields when adding columns to a smart list in the main screen
• AUDIT – A record of deleted items (pedigrees, individuals, and samples) is now stored so that the audit trail can be viewed for deleted items
• PED/IND – Optimize the copy pedigree operation so that it makes less calls to the DB when copying markers
• ACTIONS – ability to batch select fields in the field chooser for display fields
• REACTIONS – ability to batch select fields in the field chooser for inherited fields in a create aliquot reaction
• REACTIONS – allow users to specify a default printer for a print reaction; one that is NOT the default printer for the PC
• REACTIONS – Have a naming default for Create Sample reaction to allow for SCANNING samples into the database instead of autoincrementing (No Default)
• CONTAINERS – change well positions from “A1, A2″ to “A01, A02″
• PLATES – Include the plate name when you print the lay-out of the plate viewer

Fixes

• FIELDS – Progeny takes 15 min to update drop down in  fields module
• FIELDS – Editing of the table structure for a Table Field causes the DB to error.
• FIELDS – Add Field and Edit Field windows are not sized properly when you set the res to 125%
• REPORTING – System field “Order Number” causes a DB error when you try to run it
• REPORTING – Every time you click a report tab, it launches the “Report Setup” window unnecessarily
• REPORTING – Change Field does not seem to work
• MAIN – Merge Pedigree not populating pedigrees in the pedigree chooser if you are not logged in as progeny
• SEARCH – Markers Module, search for a marker doesn’t seem to be working.
• IND – copying individuals is crashing if you have the Open on Save checkbox checked
• PED/IND – Load from Txt – cannot load data sheet into folder that already has a data sheet saved
• PED – the first time you click on marker data to edit it in the subtext, nothing happens
• PED – enable “save as image” in the pedigree to print pedigree relationships exactly as they appear on screen
• PED – scrolling in the pedigree takes away the ability to edit marker data and change the color bars
• SAMPLES – Dates are not formatted properly in the Chain of Custody list in the Samples module
• SCAN – “Browse…” option not enabled for hyperlinks in scan mode
• SCAN – If the default/specified printer fails to get initialized, show an error and then prompt the user to choose a printer
• REACTIONS – Add Reaction and Edit Reaction windows are not sized properly when you set the res to 125%
• IDS – Pedigree Data Fields are not properly labeled in the properties window if you add them to an Individual Data Sheet
• PLATES – security was not getting set up properly in the conversion to Progeny 8

Bug Fixes

• Workflows with Yes/No fields get stuck on those fields preventing actions from being completed
• Tabbing from one field to another in datasheets causes the screen to scroll unnecessarily

Bug Fixes

• Invalid menu options display if begin typing text in a hyperlink field before menu to the right appears
• Smart draw  causes pedigrees to allocate too much vertical space even when subtext lines do not support it
• New individual window must pre-populate selected folder even when folder is a subfolder of another
• Reaction disappears from list when editing the preceding reaction in the list
• Uploads done from tables do not get saved in the database even after the file is uploaded
• Add more visual cues to license request window to show when the server failed to send email to register@progenygenetics.com
• Cannot update table date sub fields in a spreadsheet
• Inserting table row does not work when you have more than one table in the spreadsheet
• Proband icon not being rendered on pedigree drawing unless selected
• Change status to deceased in family history module pedigree drawing throws uncaught error
• Configuration changes are now saved when typing in email responses and user hits enter to go to next line
• Fix tab orders on family history data entry table

Enhancements/Features

• Draw sample/genotype status icons on pedigrees
• Prompt to replace if file already exists on server when uploading documents
• Use open on save in new individual window
• Add ability to change samples names
• Render Yes/No fields as checkboxes inside tables and spreadsheets as opposed to rendering as dropdown fields
• Add support of browser back and forward buttons when navigating family history module

Fixes

• WKFL – When you reset a sample to a workflow by way of a stage in that workflow, it does not remove the sample from the stage (gives the ability to reset a sample to the beginning of a workflow)
• Scan Mode was not allowing you to assign a sample to an individual if you were using a non-System Field
• Custom Linkage export needs to zero out a person’s parent IDs if the parents are not included in the export
• The sample status box in the pedigree is not displaying the correct color
• In the spreadsheet export it was not correctly formatting returns and newlines in all cases
• Affymetrix genotype imports were causing Progeny to crash
• The System Field Container Barcode was causing a database error if you include it in the Query
• Individual table fields were allowed to be added to a Sample spreadsheet causing errors when you run the spreadsheet
• Sorting a table in a datasheet by a computed field was causing the data to disappear
• Imports and exports (specifically in the spreadsheet) were not handling commas in csv files properly
• The System Fields Last Modified and Modified By were causing speed issues wherever they were used (mostly in the pedigree smartlist)
• Copying fields from one datasheet tab to another can generate duplicate tab order numbers, and those fields will be skipped in the tab order
• The System Field Container Path was causing database errors in new databases
• Chain of custody audit was not formatting dates properly
• Every time you add a new container through the Inventory module, a new folder named “Added Plates” gets added in the Containers module
• Cannot move icons on the pedigree when you have One Click Add enabled
• Create Samples through the Pedigree Import was not creating samples
• The database connection was dropping if you created more than 48 fields in the Fields module
• The Allegro export was not exporting the frequency if a marker had no calls whatsoever
• System generated folders and containers were not getting added to the trees, and would require restarting Progeny to see them.  Same for deleted containers
• In some cases the Save as Txt functionality was encountering a database error when exporting marker data

Enhancements

• Added the ability to select multiple containers so you can drag and delete them in the Containers module
• Changed the sub pedigree icon so that it will stand out more against the regular pedigree icon
• Added a System field for Pedigree (and Individual) Folder Path
• Progeny Sync functionality added that will allow users to Synchronize folders between two databases

Bug Fixes

• Datasheets – Field labels are not consistently positioned and/or aligned
• Date Fields – Dates for USA locales are not displaying properly, showing year/month/day instead of the US style date format

Bug Fixes

• Datasheets – Database error when trying to insert rows in some datasheet tables
• Datasheets – Hyperlink fields do not update right away when document is uploaded
• Datasheets – Datasheets opened from shortcuts have not title/name in the datasheet tab
• Datasheets – Added text is not displayed in sample datasheets and pedigree datasheets
• Datasheets – Checkbox labels are not displayed on the right side of checkbox
• Hyperlinks – Document management is now included in hyperlink fields
• Checkboxes – Yes no fields now rendered and edited as checkboxes in tables and spreadsheets

Bug Fix

• Datasheets – Database error when trying to insert rows in some datasheet tables

Fixes

• Spreadsheet -  In the “toggled” pedigree spreadsheet when you click “Fields” nothing happens.
• Datasheet – There’s a crash when “back tabbing” in an Individual Datasheet table with a single column
• Auditing – System crashes when you right-click in the blank space of a field audit report and select “Field Audit Report…” from the dropdown
• Pedigree – Icon symbols are applying the wrong symbols for the last symbol in the symbols list
• Spreadsheet – Cannot slow click on the Query edit boxes for values to edit the values Auditing – Fill Left and Fill right option under right click menu in the Field Audit Report
• Tasks – Progeny crashes when launching open sample datasheet for a sample within a task Auditing – Fix the SQL for the sample audit status system field
• Datasheet -  Conditionally show the Field Audit Report menu on datasheet fields
• Pedigree – Toggle spreadsheet gives database error when System Field Sample Name is added to the format
• Sample Auditing – Instant Crash with error when turning on auditing for a sample XML – XML import will fail sometimes if the file does not contain an individual name for each person
• Database – Unable to convert database version from Progeny 7 to Progeny 8.

New Features

• Fields – New system fields for Primary Sample, modified date, modified by, created date and created by for
  Individuals, Samples, and Markers
• Pedigree – Ability to select multiple degrees of relation by holding the SHIFT or CTRL key in the pedigree
• Import – Import containers and update locations automatically
• Datasheet – Enable users to view the entire field name path to be able to identify fields on the data sheet