Academic Articles

Progeny's flexible pedigree and lab management funtions have been used to aid in a variety of academic genetic research publications.  If you would like us to include a link to your recently published paper that cites Progeny Software, please contact us.  Below are just a few examples.

2011

• Genome gender diversity in affected sib-pairs with familial vesico-ureteric reflux identified by single nucleotide polymorphism linkage analysis - BJU International, October 2011.
• Replication of a Genome-Wide Association Study of Birth Weight in Preterm Neonates - Journal of Pediatrics, July 2011.
• Building an Integrated Neurodegenerative Disease Database at an Academic Health Center - Alzheimers & Dementia, July 2011.
• Vitamin D Receptor (VDR) and Group-Specific Component (GC, Vitamin D–Binding Protein) Polymorphisms in Myopia - Investigative Ophthalmology and Visual Science, May 2011.
• Implications of a warming eastern Bering Sea for Bristol Bay sockeye salmon - ICES Journal of Marine Science - April 2011.
• An empirical comparison of SNPs and microsatellites for parentage and kinship assignment in a wild sockeye salmon (Oncorhynchus nerka) population - Molecular Ecology Resources, March 2011.
• Single-Nucleotide Polymorphisms in the KCNN3 Gene Associate With Preterm Birth - Reproductive Sciences, March 2011.
• Genetic Studies in the Nigerian Population Implicate a MSX1 Mutation in Complex Oral Facial Clefting Disorders - The Cleft Palate- Craniofacial Journal, February 2011.
• Genome-wide analysis of genetic susceptibility to language impairment in an isolated Chilean population - European Journal of Human Genetics, January 2011.
• Ingredients for Success: A Familial Cancer Clinic in an Oncology Practice Setting - Journal of Oncology Practice, January 2011.

2010

• Extending Comprehensive Cancer Center Expertise in Clinical Cancer Genetics and Genomics to Diverse Communities: The Power of Partnership - Journal of the National Comprehensive Cancer Network, June 2010.
• Rare Variant Mutations in Pregnancy-Associated or Peripartum Cardiomyopathy - Circulation, American Heart Association - May 2010.
• Role of Polymorphic Variants as Genetic Modulators of Infection in Neonatal Sepsis - Pediatric Research, May 2010.
• Identification of a Gene for Renal-Hepatic-Pancreatic Dysplasia by Microarray-Based Homozygosity Mapping - Journal of Molecular Diagnostics, 2010.
• The variable phenotype of the p.A16V mutation of cationic trypsinogen (PRSS1) in pancreatitis families - GUT, International Journal of Gastroenterology and Hepatology, March 2010.
• Genome-wide linkage analysis of quantitative biomarker traits of osteoarthritis in a large, multigenerational extended family - Arthritis and Rheumatism, March 2010.

2009

• TP53 PIN3 and MDM2 SNP309 polymorphisms as genetic modifiers in the Li–Fraumeni syndrome: impact on age at first diagnosis - Journal of Medical Genetics, November 2009
• Narcolepsy is strongly associated with the T-cell receptor alpha locus - Nature Genetics, May 2009.
• Determination of Genetic Predisposition to Patent Ductus Arteriosus in Preterm Infants - Pediatrics, April 2009.
• Prediction of Lynch Syndrome in Consecutive Patients With Colorectal Cancer - Journal of the National Cancer Institute, February 2009.
• A genome scan in affected sib-pairs with familial vesicoureteral reflux identifies a locus on chromosome 5Sib-pair analysis in familiar VUR - European Journal of Human Genetics, February 2009
• Genome-wide Linkage Analysis with Clustered SNP Markers - Journal of Biomolecular Screening, 2009.

2008

• Genetic variants of the HLA-A, HLA-B and AIF1 loci show independent associations with type 1 diabetes in Norwegian families - Genes and Immunity, November 2008.
• Genomic screening identifies novel linkages and provides further evidence for a role of MYH9 in nonsyndromic cleft lip and palate - European Journal of Human Genetics, August 2008.
• Bifida Research Resource: Study design and participant characteristics - Birth Defects Research Part A: Clinical and Molecular Teratology, June 2008.
• TARDBP mutations in amyotrophic lateral sclerosis with TDP-43 neuropathology: a genetic and histopathological analysis - The Lancet Neurology, May 2008.
• TINF2, a Component of the Shelterin Telomere Protection Complex, Is Mutated in Dyskeratosis Congenita - American Journal of Human Genetics, February 2008.
• Branchio-oto-renal syndrome (BOR): novel mutations in the EYA1 gene, and a review of the mutational genetics of BOR - Human Mutation, January 2008.

2007

• Ocular melanosis in the Cairn Terrier: clinical description and investigation of mode of inheritance - Veterinary Ophthalmology, November 2007.
• Cancer Risk among the Relatives of Patients with Pancreatic Ductal Adenocarcinoma - Pancreatology, October 2007.
• CRISPLD2: a novel NSCLP candidate gene - Human Molecular Genetics, September 2007.
• Apoptotic Gene Analysis in Idiopathic Talipes Equinovarus (Clubfoot) - Clinical Orthopaedics & Related Research, September, 2007.
• DNA Identification of "Earthquake McGoon" 50 Years Postmortem - Journal of Forensic Sciences, September, 2007
• Mutations in the UBIAD1 Gene, Encoding a Potential Prenyltransferase, Are Causal for Schnyder Crystalline Corneal Dystrophy - PLoS ONE, August 2007.
• Genomewide Suggestive Linkage of Opioid Dependence to Chromosome 14q - Human Molecular Genetics, April 2007.
• Genome-Wide Linkage Scan of Schizophrenia: a Cross-Isolates Study - Genomics, February 2007.

Older

• Validation of a Self-Administered, Computerized Tool for Collecting and Displaying the Family History of Cancer  - Journal of Clinical Oncology, December 2006.
• Genetic-Epidemiology Study in Ethnically and Demographically Diverse Isolates of Daghestan  (Northern Caucasus, Russia) - Croatian Medical Journal, August 2006
• Analysis of cancer risk and BRCA1 and BRCA2 mutation prevalence in the kConFab familial breast cancer resource - Breast Cancer Research, February 2006.
• A novel autosomal dominant restless legs syndrome locus maps to chromosome 20p13 - Neurology, 2006.
• Letting the family know: balancing ethics and effectiveness when notifying relatives about genetic testing for a familial disorder  - Journal of Medical Genetics, December, 2005.
• Linkage of a Pedigree Drawing Program and Database to a Program for Determining BRCA Mutation Carrier Probability - Familial Cancer, November 2005.
• SISE matters: the Sum of Information on Seventy-yr-old Equivalents measures pedigree information content when assessing the risk of HNPCC in a family - Familial Cancer, June 2005.
• SNPLINK: multipoint linkage analysis of densely distributed SNP data incorporating automated linkage disequilibrium removal - Bioinformatics, April 2005.
• Genomewide linkage searches for Mendelian disease loci can be efficiently conducted using high-density SNP genotyping arrays - Nucleic Acids Research, November 2004.
• Co-segregation of the PROS1 locus and protein S deficiency in families having no detectable mutations in PROS1 - Journal of Thrombosis and Haemostasis, November 2004.
• Heritability and Segregation Analysis of Deafness in U.S. Dalmatians - Genetics, March 2004.
• Different Expressivity of BRCA1 and BRCA2: Analysis of 179 Italian Pedigrees with Identified Mutation - Breast Cancer Research and Treatment, March 2003.
• Demographic and phenotypic features of 70 families segregating Barrett’s oesophagus and oesophageal adenocarcinoma - Journal of Medical Genetics, 2003.
• Autosomal Dominant Progressive Nephropathy with Deafness: Linkage to a New Locus on Chromosome 11q24 - Journal of American Society of Nephrology, 2003.
• Altered focal adhesion regulation correlates with cardiomyopathy in mice expressing constitutively active rac1 - Journal of Clinical Investigation, April 2000.

 

Citing Progeny in Academic Articles

The following methods of citation may be used when citing Progeny in any academic or scholarly research publication.

• Pedigree Citation
  Pedigree’s were constructed and drawn using (Progeny Desktop Version N/Progeny Enterprise Version N/Progeny Lab Version N) (Progeny Software LLC, South Bend, IN, www.progenygenetics.com).
  
• Family Data Citation
  Family data and pedigree information was stored and manipulated using the genetic data management system (Progeny Desktop Version N/Progeny Enterprise Version N/Progeny Lab Version N) from Progeny Software (Progeny Software LLC, South Bend, IN, www.progenygenetics.com).
  
• LINKAGE Analysis
  Family data, pedigree information, genetic marker and genotype data was stored, manipulated and error-checked using the genetic data management system (Progeny Desktop Version N/Progeny Enterprise Version N/Progeny Lab Version N) from Progeny Software (Progeny Software LLC, South Bend, IN, www.progenygenetics.com) prior to export to (Enter LINKAGE software).
  
• Association Analysis
  Individual data, genetic marker and genotype data was stored, manipulated and error-checked using the genetic data management system (Progeny Desktop Version N/Progeny Enterprise Version N/Progeny Lab Version N) from Progeny Software (Progeny Software LLC, South Bend, IN, www.progenygenetics.com) prior to export to (Enter ASSOCIATION software).
  
• Family Based Association (for haplotype display)
  Pedigree and individual information was combined with marker and genotype data using the genetic data management system (Progeny Desktop Version N/Progeny Enterprise Version N/Progeny Lab Version N) from Progeny Software (Progeny Software LLC, South Bend, IN, www.progenygenetics.com) to display the haplotypes on the pedigree.