Serialized Form

Package com.objex.progeny.anywhere.data

Class com.objex.progeny.anywhere.data.Allele extends java.lang.Object implements Serializable

Serialized Fields

ID

java.lang.String ID

The Allele's ID

rgb

boolean rgb

type

java.lang.String type

The Allele type designates the type of the Allele. Common Allele types are HLA-A, HLA-B, HLA-DR etc

color

long color

The Allele's color use to draw the Allele Icon on the Pedigree

colorManuallyAssigned

boolean colorManuallyAssigned

paternity

java.lang.String paternity

The partenity of the Allele inheritance. Possible types are Allele.MATERNAL and Allele.PATERNAL

value

java.lang.String value

iconX

double iconX

The position in Graphics2D space of the Allele's data. This is where the Allele bar will be drawn starting from

x

double x

The position in Graphics2D space of the Allele's data. This is where the Allele bar will be drawn starting from

iconY

double iconY

The position in Graphics2D space of the Allele's data. This is where the Allele bar will be drawn starting from

y

double y

The position in Graphics2D space of the Allele's data. This is where the Allele bar will be drawn starting from

width

double width

height

double height

hatch

int hatch

infer

boolean infer

indet

boolean indet

Class com.objex.progeny.anywhere.data.Chromosome extends java.lang.Object implements Serializable

Serialized Fields

markers

java.util.Map<K,V> markers

The markers that make up this chromosome. A chromosome will have any number of markers. If all the Maternal markers of a chromosome have been inherited from one parent then the result is a linked set of Alleles inherited together making up a Haplotype. Each marker in the markers map is retrivable using the marker ID/name.

name

java.lang.String name

nextMarkerSequence

int nextMarkerSequence

id

int id

Class com.objex.progeny.anywhere.data.ChromosomeLegendItem extends java.lang.Object implements Serializable

Serialized Fields

markers

java.util.Map<K,V> markers

name

java.lang.String name

nextMarkerSequence

int nextMarkerSequence

marker_fieldid_map

java.util.Map<K,V> marker_fieldid_map

id

int id

Class com.objex.progeny.anywhere.data.ChromosomeMarker extends java.lang.Object implements Serializable

Serialized Fields

maternalAllele

Allele maternalAllele

paternalAllele

Allele paternalAllele

name

java.lang.String name

sequence

int sequence

genetic_distance

double genetic_distance

location

double location

alias

java.lang.String alias

cM

double cM

basePairs

double basePairs

Class com.objex.progeny.anywhere.data.DataTRF extends java.lang.Object implements Serializable

Serialized Fields

data

XRFCustomData data

subtextLegend

XRFSubtextLegend subtextLegend

symbolsLegend

XRFSymbolsLegend symbolsLegend

xmlString

java.lang.String xmlString

geneticData

java.util.Map<K,V> geneticData

markerLegend

MarkerLegend markerLegend

Class com.objex.progeny.anywhere.data.MarkerData extends java.lang.Object implements Serializable

Serialization Methods

readObject

private void readObject(java.io.ObjectInputStream stream)
                 throws java.io.IOException,
                        java.lang.ClassNotFoundException

Overide readobject so that the transient members are set before reading of serilizable members commences

Throws:

java.io.IOException

java.lang.ClassNotFoundException

Serialized Fields

nextpos

int nextpos

chromosomes

java.util.Map<K,V> chromosomes

chromosomes_id_map

java.util.Map<K,V> chromosomes_id_map

Class com.objex.progeny.anywhere.data.MarkerLegend extends java.lang.Object implements Serializable

Serialization Methods

readObject

private void readObject(java.io.ObjectInputStream stream)
                 throws java.io.IOException,
                        java.lang.ClassNotFoundException

Overide readobject so that the transient members are set before reading of serilizable members commences

Throws:

java.io.IOException

java.lang.ClassNotFoundException

Serialized Fields

nextpos

int nextpos

chromoItems

java.util.Map<K,V> chromoItems

Class com.objex.progeny.anywhere.data.MarkerLegendItem extends java.lang.Object implements Serializable

Serialized Fields

name

java.lang.String name

sequence

int sequence

alias

java.lang.String alias

cM

double cM

basePairs

double basePairs

fieldid

int fieldid

legendDisplayText

java.lang.String legendDisplayText

type

int type

Class com.objex.progeny.anywhere.data.XRFCustomData extends java.lang.Object implements Serializable

Serialized Fields

data

java.util.Map<K,V> data

Map of data being transmitted. Key is UPN. Value is a Map of Maps keyed by fieldtype. That internal map is keyed by fieldid and the value is a XRFData object

Class com.objex.progeny.anywhere.data.XRFFolder extends java.lang.Object implements Serializable

Serialized Fields

id

int id

name

java.lang.String name

parent

XRFFolder parent

children

java.util.Vector<E> children

Package com.objex.progeny.anywhere.fields

Class com.objex.progeny.anywhere.fields.FieldContext extends java.lang.Object implements Serializable

Serialized Fields

context

int context

Class com.objex.progeny.anywhere.fields.XRFComputedField extends XRFIDSDataField implements Serializable

Class com.objex.progeny.anywhere.fields.XRFDateField extends XRFIDSDataField implements Serializable

Class com.objex.progeny.anywhere.fields.XRFDateFieldType extends XRFFieldType implements Serializable

Class com.objex.progeny.anywhere.fields.XRFDropdownField extends XRFIDSDataField implements Serializable

Serialized Fields

dropdownValues

java.lang.String[] dropdownValues

Class com.objex.progeny.anywhere.fields.XRFDropdownFieldType extends XRFFieldType implements Serializable

Class com.objex.progeny.anywhere.fields.XRFFieldType extends java.lang.Object implements Serializable

Serialized Fields

typeid

int typeid

typename

java.lang.String typename

Class com.objex.progeny.anywhere.fields.XRFHyperlinkField extends XRFIDSDataField implements Serializable

Class com.objex.progeny.anywhere.fields.XRFHyperlinkFieldType extends XRFFieldType implements Serializable

Class com.objex.progeny.anywhere.fields.XRFIDSDataField extends java.lang.Object implements Serializable

Serialized Fields

fieldid

int fieldid

fieldname

java.lang.String fieldname

fieldtype

XRFFieldType fieldtype

tableid

int tableid

defaultWidth

int defaultWidth

Class com.objex.progeny.anywhere.fields.XRFIDSLookupTableField extends XRFIDSDataField implements Serializable

Serialized Fields

lookupTableInfo

XRFLookupTableInfo lookupTableInfo

subfields

XRFField[] subfields

Class com.objex.progeny.anywhere.fields.XRFImageField extends XRFIDSDataField implements Serializable

Class com.objex.progeny.anywhere.fields.XRFImageFieldType extends XRFFieldType implements Serializable

Class com.objex.progeny.anywhere.fields.XRFLookupTableFieldType extends XRFFieldType implements Serializable

Class com.objex.progeny.anywhere.fields.XRFLookupTableInfo extends java.lang.Object implements Serializable

Serialized Fields

columnorder

int[] columnorder

widths

int[] widths

m_column_values_map

java.util.Map<K,V> m_column_values_map

Class com.objex.progeny.anywhere.fields.XRFNumberField extends XRFIDSDataField implements Serializable

Class com.objex.progeny.anywhere.fields.XRFNumberFieldType extends XRFFieldType implements Serializable

Class com.objex.progeny.anywhere.fields.XRFSummaryField extends XRFIDSDataField implements Serializable

Class com.objex.progeny.anywhere.fields.XRFSummaryFieldType extends XRFFieldType implements Serializable

Class com.objex.progeny.anywhere.fields.XRFSystemField extends XRFIDSDataField implements Serializable

Class com.objex.progeny.anywhere.fields.XRFSystemFieldType extends XRFFieldType implements Serializable

Class com.objex.progeny.anywhere.fields.XRFTableField extends XRFIDSDataField implements Serializable

Serialized Fields

subfields

XRFField[] subfields

Class com.objex.progeny.anywhere.fields.XRFTableFieldType extends XRFFieldType implements Serializable

Class com.objex.progeny.anywhere.fields.XRFTableSummaryField extends XRFIDSDataField implements Serializable

Class com.objex.progeny.anywhere.fields.XRFTableSummaryFieldType extends XRFFieldType implements Serializable

Class com.objex.progeny.anywhere.fields.XRFTextField extends XRFIDSDataField implements Serializable

Class com.objex.progeny.anywhere.fields.XRFTextFieldType extends XRFFieldType implements Serializable

Serialized Fields

imageURL

java.lang.String imageURL

Class com.objex.progeny.anywhere.fields.XRFYesNoField extends XRFIDSDataField implements Serializable

Class com.objex.progeny.anywhere.fields.XRFYesNoFieldType extends XRFFieldType implements Serializable

Class com.objex.progeny.anywhere.fields.XTFComputedFieldType extends XRFFieldType implements Serializable

Package com.objex.progeny.anywhere.fields.data

Class com.objex.progeny.anywhere.fields.data.XRFDateFieldData extends XRFFieldData implements Serializable

Serialized Fields

dataValue

java.util.Date dataValue

violation

java.lang.String violation

Class com.objex.progeny.anywhere.fields.data.XRFDoubleFieldData extends XRFFieldData implements Serializable

Serialized Fields

dataValue

java.lang.Double dataValue

violation

java.lang.String violation

Class com.objex.progeny.anywhere.fields.data.XRFFieldData extends java.lang.Object implements Serializable

Serialized Fields

modified

boolean modified

field

XRFField field

Class com.objex.progeny.anywhere.fields.data.XRFIntegerFieldData extends XRFFieldData implements Serializable

Serialized Fields

dataValue

java.lang.Integer dataValue

violation

java.lang.String violation

Class com.objex.progeny.anywhere.fields.data.XRFTableData extends java.lang.Object implements Serializable

Serialized Fields

field

XRFField field

modified

boolean modified

rows

java.util.Map<K,V> rows

Class com.objex.progeny.anywhere.fields.data.XRFTableData.Row extends java.lang.Object implements Serializable

Serialized Fields

rrn

int rrn

dirty

boolean dirty

newrec

boolean newrec

m_data_map

java.util.Map<K,V> m_data_map

deleted

boolean deleted

Class com.objex.progeny.anywhere.fields.data.XRFTextFieldData extends XRFFieldData implements Serializable

Serialized Fields

dataValue

java.lang.String dataValue

violation

java.lang.String violation

Package com.objex.progeny.anywhere.legend.subtext

Class com.objex.progeny.anywhere.legend.subtext.XRFSubtextLegend extends java.lang.Object implements Serializable

Serialized Fields

items

java.util.List<E> items

Class com.objex.progeny.anywhere.legend.subtext.XRFSubtextLegendItem extends java.lang.Object implements Serializable

Serialized Fields

row

int row

column

int column

field

XRFField field

legendDisplayText

java.lang.String legendDisplayText

maxtablerowcount

int maxtablerowcount

rowitems

java.util.Map<K,V> rowitems

Class com.objex.progeny.anywhere.legend.subtext.XRFSubtextLegendItem.Row extends java.lang.Object implements Serializable

Serialized Fields

id

int id

columns

java.util.List<E> columns

Package com.objex.progeny.anywhere.legend.symbols

Class com.objex.progeny.anywhere.legend.symbols.XRFSymbolsLegend extends java.lang.Object implements Serializable

Serialized Fields

x

int x

y

int y

width

int width

height

int height

items

java.util.List<E> items

Class com.objex.progeny.anywhere.legend.symbols.XRFSymbolsLegendItem extends java.lang.Object implements Serializable

Serialized Fields

field

XRFField field

op

CompareOperator op

compareValue

XRFData compareValue

color

int color